PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039664m
Common NameCISIN_1g039664mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 214aa    MW: 24692.2 Da    PI: 10.1018
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039664mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.71e-18130213190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+k +++s+v +  +l lp++f++++  +k + ++++lede+gr++e  +i +kk+    l++GW+ F+  ++L++gD +vF+l+++++f
  orange1.1g039664m 130 FIKSMVRSHVYSCFWLGLPNQFCKQNL-PK-TVTEMVLEDENGREFEAVYIGQKKG----LSGGWRAFALHHKLDDGDALVFELVEQKRF 213
                        89*********************9994.33.3459***************655555....9**********************9987766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-19121213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-20123213IPR015300DNA-binding pseudobarrel domain
CDDcd100178.18E-23128214No hitNo description
PfamPF023624.9E-17130213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.266130214IPR003340B3 DNA binding domain
SMARTSM010191.6E-15130214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAKTNTYEEA RKKRLEENSQ RLQELGIEKI SKTLSQLSKS VKKSPQAQRH LPKFKSESVI  60
SIVEPRRSSR ARNSVVSYRD DLDIDLHPLR KSYLARPLEE VKMASYEERA RALKSAEQLQ  120
SSLQSGYPSF IKSMVRSHVY SCFWLGLPNQ FCKQNLPKTV TEMVLEDENG REFEAVYIGQ  180
KKGLSGGWRA FALHHKLDDG DALVFELVEQ KRFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015384133.11e-131PREDICTED: putative B3 domain-containing protein At5g58280
SwissprotQ5KQI49e-65Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
SwissprotQ9FHB28e-65Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A067EVH81e-158A0A067EVH8_CITSI; Uncharacterized protein (Fragment)
STRINGVIT_06s0004g08270.t017e-97(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM161411214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-57B3 family protein